PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024889-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 239aa    MW: 26175.7 Da    PI: 5.7395
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024889-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.68.9e-5428123297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         ++qd+flPianvsrimk+ lP+nakisk+aketvqecvse+isfvt+easdkcqrekrktingddllwa+ tlGfe+yv++l+ yl kyre
  WALNUT_00024889-RA  28 KDQDKFLPIANVSRIMKRSLPTNAKISKEAKETVQECVSEYISFVTGEASDKCQREKRKTINGDDLLWAMMTLGFENYVKSLRNYLGKYRE 118
                         79***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +ege+
  WALNUT_00024889-RA 119 IEGEN 123
                         **996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-4923135IPR009072Histone-fold
SuperFamilySSF471134.81E-3730132IPR009072Histone-fold
PfamPF008084.9E-263397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-186179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-188098No hitNo description
PRINTSPR006151.8E-1899117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTGKRTQTSP LGSPPSSSGN ISDDSSSKDQ DKFLPIANVS RIMKRSLPTN AKISKEAKET  60
VQECVSEYIS FVTGEASDKC QREKRKTING DDLLWAMMTL GFENYVKSLR NYLGKYREIE  120
GENSMDTQGD KPPSTDSCPD HGSNNYNKIQ TASSSTTNNV LANIIADFHQ RFSGGFYSFG  180
PQETPKTSFG ECGRVAGCEE NSVIGAFKVN GIRENGDGDG NRSSSAAEAH LHQEIDQYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4428118292Transcription factor HapC (Eurofung)
4g92_B1e-4428118292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493850.11e-81PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBLA0A067F1F43e-83A0A067F1F4_CITSI; Uncharacterized protein
STRINGPOPTR_0005s08510.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.19e-55nuclear factor Y, subunit B3